🔬 Microscopy Image Analysis Simulator

Practice segmentation, counting, and intensity measurement on synthetic microscopy images.

Hover over image to see pixel info

🧬 Cell Parameters

Number of cells 50 Cell size 20 Cell brightness 0.7 Background noise 0.1

⚙️ Thresholding

Threshold value 128

📊 Analysis Results

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Cells

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Mean Intensity

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Total Area

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Avg. Area

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% Coverage

💡 Generate an image, adjust threshold, click "Run Analysis".

 

WHAT IT DOES:

Generate synthetic microscopy images with simulated cells and

practice quantitative image analysis. You can:

  • Adjust cell number, size, brightness, and noise

  • Apply thresholding to segment cells

  • Count cells and measure intensity

  • Calculate total area, average cell area, and % coverage

WHO IT'S FOR:

• Bioinformatics students learning image analysis

• Researchers preparing for microscopy experiments

• Teachers demonstrating segmentation concepts

• Anyone who wants to understand how image analysis works

HOW TO USE IT:

1. Click "Generate New Image" to create a synthetic image

2. Adjust cell parameters (number, size, brightness, noise)

3. Use the threshold slider to separate cells from background

4. Click "Run Analysis" to count cells and measure features

5. Hover over the image to see pixel values

6. Click "Apply Threshold" to see the segmentation result